MmuEX0027270 @ mm10
Exon Skipping
Gene
ENSMUSG00000024940 | Ltbp3
Description
latent transforming growth factor beta binding protein 3 [Source:MGI Symbol;Acc:MGI:1101355]
Coordinates
chr19:5741335-5746120:+
Coord C1 exon
chr19:5741335-5742562
Coord A exon
chr19:5745440-5745769
Coord C2 exon
chr19:5745918-5746120
Length
330 bp
Sequences
Splice sites
3' ss Seq
GACCCCTGTCTCCTCCTCAGTGG
3' ss Score
7.82
5' ss Seq
AAGGTACTA
5' ss Score
7.52
Exon sequences
Seq C1 exon
AGTTTCTTCGCTCTACCCTCAGTGCAGCTTCCATCGCTCTCCCTCGCAACGGGGATCCCGGCCGCTCCTGCTGTCCCCTCCCTACCCTTGGCTTCTCGCCCCGCTCTGCCCTCTGCTACCAACACTCGATCCCCTGCTCGGGCTCGACCTCCAATCTCCGAGGGTCGTGCGGCCCCGGATGCCCGGGCCCCGAGGGGCTGCCCACGGCCTGGCCCCTGCGATGCGCCAGGCCGGGGCATTGGGGCTGCTGGCACTACTCCTGCTGGCGCTGCTGGGCCCCGGCGGCGGGGCCGAGGGTGGGCCGGCCGGCGAGCGGGGCACAGGCGGGGGCGGGGCGCTGGCCCGCGAACGCTTCAAGGTGGTCTTTGCGCCAGTGATCTGCAAGCGGACCTGTCTGAAGGGCCAGTGTCGGGACAGCTGTCAGCAGGGCTCCAACATGACGCTCATCGGAGAGAACGGCCACAGCACCGACACGCTCACCGGTTCTGGCTTCCGCGTGG
Seq A exon
TGGTGTGCCCTCTACCCTGCATGAACGGTGGCCAGTGCTCTTCCCGAAACCAGTGCCTGTGTCCCCCGGATTTCACGGGGCGCTTCTGCCAGGTGCCTGCTGCAGGAACCGGAGCTGGCACCGGGAGTTCAGGCCCCGGCCTGGCCCGGACCGGGGCCATGTCCACAGGCCCGCTGCCGCCCCTTGCCCCAGAAGGAGAGTCTGTGGCTAGCAAACACGCCATTTACGCGGTGCAGGTGATCGCAGATCCTCCCGGGCCGGGGGAGGGTCCTCCTGCACAACATGCAGCCTTCTTGGTGCCCCTGGGGCCAGGACAAATCTCGGCAGAAG
Seq C2 exon
TGCAGGCTCCGCCCCCCGTGGTGAACGTGCGTGTCCATCACCCTCCTGAAGCTTCCGTTCAGGTGCACCGCATCGAGGGGCCGAACGCTGAAGGCCCAGCCTCTTCCCAGCACTTGCTGCCGCATCCCAAGCCCCAGCACCCGAGGCCACCCACCCAAAAGCCACTGGGCCGCTGCTTCCAGGACACATTGCCCAAGCAGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024940-'4-3,'4-1,7-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.296 A=0.631 C2=0.882
Domain overlap (PFAM):
C1:
NO
A:
PF0000822=EGF=WD(100=24.3)
C2:
PF0068312=TB=PU(2.3=1.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAACGCTTCAAGGTGGTCTT
R:
TTGGGCAATGTGTCCTGGAAG
Band lengths:
351-681
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types