BtaEX6103422 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006747 | LTBP3
Description
latent transforming growth factor beta binding protein 3 [Source:HGNC Symbol;Acc:HGNC:6716]
Coordinates
chr29:44396722-44400578:-
Coord C1 exon
chr29:44400257-44400578
Coord A exon
chr29:44397082-44397411
Coord C2 exon
chr29:44396722-44396924
Length
330 bp
Sequences
Splice sites
3' ss Seq
GACCCACCTCTCCTCCCCAGTGG
3' ss Score
7.87
5' ss Seq
AAGGTACCA
5' ss Score
7.87
Exon sequences
Seq C1 exon
ATGCCCGGGCCCCGTGGGGCTGCTGGCGGCCTGGCCCCTGAGATGCGCGGGGCGGGGGCGGCGGGGCTGCTGGCGCTGCTGCTGCTGCTGCTGCTGGGCCCGGGCGGCGGGGCCGAGGGGGGGCCGGCGGGCGAGAGGGGCGCTGGCGGGGGCGGGGCGCTGGCCCGCGAGCGCTTCAAGGTGGTCTTTGCGCCGGTGATCTGCAAGCGGACCTGTCTCAAGGGCCAGTGTCGGGACAGTTGTCAGAAGGGCTCCAACATGACGCTCATCGGAGAGAACGGCCACAGCACCGACACGCTCACGGGCTCCGGCTTCCGCGTGG
Seq A exon
TGGTGTGCCCCCTGCCCTGTATGAACGGCGGCCAGTGCTCCTCGCGAAACCAGTGCCTGTGTCCCCCGGACTTCACGGGTCGCTTCTGCCAGGTGCCGGCTGGAGGAGCTGGCGGAGGCGCTGGCGGCTCAGGCCCTGGGCTTGGCCGGGCCGGGGCCCTGTCCACGGGCGCGCTGCCGCCCCTGGCTCCAGAAGGCGAGTCTGTGGCCAGCAAGCACGCCATGTACGCGGTCCAGGTGATCGCCGATCCACCAGGGCCCGGGGAGGGGCCTCCTGCCCAGCATGCGACGTTCCTGGTGCCCCTCGGGCCAGGACAGATCTCAGCGGAAG
Seq C2 exon
TGCAGGCCCCGCCCCCCGTGGTGAACGTGCGCGTCCACCACCCGGCCGAGGCCTCAGTCCAAGTGCACCGCATTGAAGGGCCCAACGCCGAGGGCCCGGCCCCCTCCCAGCACCTGCTGCCGCACCCCAAGCCCGCGCATCCCCGGCCACCCACCCAGAAGCCCCTGGGCCGTTGCTTCCAGGACACGCTGCCCAAGCAACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006747-'1-1,'1-0,3-1=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.278 A=0.631 C2=0.882
Domain overlap (PFAM):
C1:
NO
A:
PF0000822=EGF=WD(100=24.3)
C2:
PF0068312=TB=PU(2.3=1.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCGCTTCAAGGTGGTCTTT
R:
CAGCGTGTCCTGGAAGCAAC
Band lengths:
345-675
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]