RnoALTA0024533-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000006548 | Mrc2
Description
mannose receptor, C type 2 [Source:RGD Symbol;Acc:1559436]
Coordinates
chr10:93580114-93580348:+
Coord C1 exon
chr10:93580114-93580140
Coord A exon
chr10:93580245-93580247
Coord C2 exon
chr10:93580248-93580348
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
ACTCCCCGCCTCCATCTCAGCAG
3' ss Score
4.9
Exon sequences
Seq C1 exon
TGGAGGAGAACGGCTTCCTGCCAACAG
Seq A exon
CAG
Seq C2 exon
CGCTTCCTGAGAACCCGGTGGCCCTGGTGGTGGTGCTGACTGCGGCAGTCCTACTCCTCCTGGCCTTGCTGACAGGGGCCCTCATCCTCTACCGGCGCCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006548-35-42,35-41-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.347
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGGAGAACGGCTTCCTG
R:
CAAGGCCAGGAGGAGTAGGAC
Band lengths:
95-98
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]