RnoINT0094086 @ rn6
Intron Retention
Gene
ENSRNOG00000006548 | Mrc2
Description
mannose receptor, C type 2 [Source:RGD Symbol;Acc:1559436]
Coordinates
chr10:93580114-93581296:+
Coord C1 exon
chr10:93580114-93580140
Coord A exon
chr10:93580141-93580247
Coord C2 exon
chr10:93580248-93581296
Length
107 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CCCCGCCTCCATCTCAGCAGCGC
3' ss Score
6.15
Exon sequences
Seq C1 exon
TGGAGGAGAACGGCTTCCTGCCAACAG
Seq A exon
GTGAGTGGAGGGAACAGCCCTGGCCTGGCTCTTTCCCTGGCTCCTCGGTCCCTGTGGGCATGACTGTGGCCTGGCTTGATGGGAACTCCCCGCCTCCATCTCAGCAG
Seq C2 exon
CGCTTCCTGAGAACCCGGTGGCCCTGGTGGTGGTGCTGACTGCGGCAGTCCTACTCCTCCTGGCCTTGCTGACAGGGGCCCTCATCCTCTACCGGCGCCGACAGAGTGCGGAGCGTGGGTCTTTTGAGGGGGCTCGCTACAGTCGCAGCAGCCGCTCTGGCCCGGCAGAGGCCACCGAGAAGAACATCCTGGTTTCTGACATGGAAATGAACGAACAACAAGAATAGAGCCAAGGGCGTGGTCAAGGGCGTGGTCAAGGTGGAGCCGGAGCCGGAGTTGGAGCTAGGGAGGCTGGGGCCCGGGGTCAGCAGGTCCCCATCACCCACCAATCCAGTTGGCCTCTGGATGGCAGCTCTTGGGAGTTGCTGCTGGGTCCCGGGGGCTTAACTTGCGATGGGCGGGGGTACCTGACCTTCCGTAGAGGCTAGGCTGAGACTTGGCAGTGGGGCATGTCCCCTTTCTCCTGGGCCTGGACCTGGACCCCCATGGTAACTGGAGGCAATATGAGAAGGGACATGAGCTTATTCATGCCTTTTCCTCCCCGGATTCCTGAGCCTAAACCAGCTGACCTGCAGCCTAGGACTCTGTCCTCTTTGTAGGCCTAGAAAGCCTGCCCCGCCTCTTGGGGTGGCTCTCTGTCATCCCTCCTACTGGGCTACATCACATCAGCTCTGTCTCCTCACTCTGCCCTCGTGCCTTTTTTTCACCCAGTGCCTCCTTCTGAGCCAAGGCCCTGGGATTTGGGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCCTCTCTCTCCCTCTGGGTGGGGGTCAGCTGAAGGGGCTGGCCAAGCATCTGTCACTCCTGTGCCTGCTGGAATGGACCTAGGGTATGGCAGGAGGGAGCCGAGCTAGGTGGCTCAGGGCACCGGTATGCTGGAGTAAAGATGGAGAGACACCTCATCCACTCACGGGGGTGTCATCTCCTGCTGGTCCCCTGTGGGGACCAAAATAAATTCCCTAATGTCTCCAGCTTCTGGCTCTGGTTTGGAGAGAAGGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006548:ENSRNOT00000055137:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.347
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGGAGAACGGCTTCCTG
R:
TGTTGTTCGTTCATTTCCATGTCA
Band lengths:
247-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]