BtaINT0094778 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015739 | MRC2
Description
Bos taurus mannose receptor, C type 2 (MRC2), mRNA. [Source:RefSeq mRNA;Acc:NM_001192670]
Coordinates
chr19:47746639-47747246:+
Coord C1 exon
chr19:47746639-47746665
Coord A exon
chr19:47746666-47746770
Coord C2 exon
chr19:47746771-47747246
Length
105 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
GGTCCTTCCGGCCACAGCAGCCC
3' ss Score
0.14
Exon sequences
Seq C1 exon
CTGAGGCGAGCAGCTTCTCCCCATCAG
Seq A exon
GTGAGTGGCAGGCAGGACTAGCCCTCTCCCCCCGGGTCCTGGTCATTCTGGGCAGCGGGCGGGCATGGCGGGGCTTCTGACCAAGGGTCCTTCCGGCCACAGCAG
Seq C2 exon
CCCTCCCGGAGAACCCCGCGGCCCTGGTGGTGGTGCTGATGGCGGTGCTCCTGCTCCTGGCTCTGCTGACGGCTGCCCTGATTCTCTACCGGCGGCGACAGAGCGTCGAGCGTGGGGCCTTCGAGGGTGCCCGCTACAGCCGCAGCTCCTCCGGCCCCAGCGAGGCCACCGAGAAGAACATCCTGGTGTCCGACATGGAAATGAACGAGCAGCAGGAGTAGAGCCGAGGGCGTGGGCGGGGCCGAGGGCGTGGGCGGGGCCGGGGGAGCTGGGCGCCCCACCAGCTGCGGTCCAGTCGGCCTATGGGGGGAGGTGGCGCCCTGGGGAGCGCTGTGGGGAGCTGAGGCTGGCAGGGCCTGGGCTGGTGGGGTCCTTCCCTCCCATGAGGGCTGGGCTGAGGCCTGGCTGAGTGCAGCATGGCGTTTCCTTTTGGGGGGGCCCTAAGGTCTTGTCACCCGGGCCTGTACCCCCATGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015739:ENSBTAT00000020897:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.260
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCAGCTTCTCCCCATCAG
R:
TCTACTCCTGCTGCTCGTTCA
Band lengths:
242-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]