MmuINT0100625 @ mm10
Intron Retention
Gene
ENSMUSG00000020695 | Mrc2
Description
mannose receptor, C type 2 [Source:MGI Symbol;Acc:MGI:107818]
Coordinates
chr11:105349568-105351139:+
Coord C1 exon
chr11:105349568-105349594
Coord A exon
chr11:105349595-105349698
Coord C2 exon
chr11:105349699-105351139
Length
104 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
ACTCCCCACCTCCATCTCAGCAG
3' ss Score
4.76
Exon sequences
Seq C1 exon
TGGAAGAGAACAGCTTCTTGCCATCAG
Seq A exon
GTGAGTGGAGGGAATGAGCGAGCCCCGGCCTGGTTCTTTCGCTGGCTCCTCTGTCCCTGTGGTCATGACTGGGGCCTGATGTGAACTCCCCACCTCCATCTCAG
Seq C2 exon
CAGCCCTCCCCGAGAGCCCGGTTGCCCTGGTGGTGGTGCTGACAGCGGTGCTGCTCCTCCTGGCCTTGATGACGGCAGCCCTCATCCTCTACCGGCGCCGACAGAGTGCGGAGCGTGGGTCCTTCGAGGGGGCCCGCTACAGTCGCAGCAGCCACTCTGGCCCCGCAGAGGCCACCGAGAAGAACATTCTGGTGTCTGACATGGAAATGAACGAACAGCAAGAATAGAGCCAAGGGCGTGGTCGGGGTGGAGCCAAAGCGGGGGAGGCAGGGGCCCCAAGGGCGTGGTCGGGGTGGAGCCAGAGCGGGTAAGGCAGGGGCCCCAGGTCAGCAGGCCCCCATCACCCATCAGCCCAGTTGTCTTTGGATGGCAACCCTTGGGAGTTGCTACTGGGTGCCGGGGGCATAGCTTGCCATGGGGTGGGAGTACCCAGCCTACCATAGAGGCTAGGCTGAGACTTGGCAGTGGGTCATGTTCCCCTTTCCCTTGGGCCTGGGATCGTGTCACCTGGACCTGGACCCCATGGCAACTGGAGGCAATATGAGAAGGGACATGAGCTTATTCATGTCTTTTCCTCCCCAGATCCCTGAGCCTAAACCTGCTGACCTGCAGCCTAGGATTCTTTCCTATCTGTAGGCCTGGAAAGCCTGCCCCGTCCCTTGGGGTGGCTCTCTGTCACCTCTCCTACTCGGCTACATCAGCTCTGTCTCCTCACCCTGCCCTCGTGCCTTTTTTTCCACCCAGTGCCTCCTTCTGAGCCATGGCCCTGGGACTTGGGTGATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATTCTCTCTCTCTTTCTCTCTGGGTGGGGGTCAGCTGAAGAGGCTGGCCAAGCATCTGTCACTCCTGTGCCTGCTGGAATGGACCTAGGGTATGGCAGGAGGGAGCCTAGGTGGCTCAGGTGTACAAACCAGGGCACCGGTGTGGTGTCTGCTGGAGTAGAGATGGAACTTCGGAGAGACACCTTATCCACTCACAGGGTGTCATCTCCTGCTGGTCAGGGGAGGGCTCTGTCCTTGAAAGAGTCCCCTGTGGGGACCAAAATAAGTTCCCTAATGTCTCCGGCTTCTGGCTCTGGCTTGGAGAGAGGGAAGATGGTTTGGAGGGGGAGGGGCGCTGGTGAGGCTGTAACCTGGGACAGCACCAGGTGCTACCATCTGGTGTGGCCTAGGAGACCAACTCATGGAACCACTCAGCACCTTTTTCCAGAGGAGAGTCCCAGCCAGGATGGAGAGTGCCAGTCCCCGTGTCCCAGTGCAGGACGATGTGAACAAAAACTCAAAGCGGACCCTCTATTGTAGTTCTTGATTCTCGAAATGTGCTATTATTGTTTGTCTTTTTTTTTTTTTTTTTAAAGAAGGAAAAAGAGAAAAAGAATAGCAAACAAATAAAAACCTTCCAGAGGCTTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020695:ENSMUST00000100335:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.347
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACAGCTTCTTGCCATCAG
R:
GCCCTTGGCTCTATTCTTGCT
Band lengths:
258-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types