GgaINT1018174 @ galGal4
Intron Retention
Gene
ENSGALG00000000461 | MRC2
Description
mannose receptor, C type 2 [Source:HGNC Symbol;Acc:HGNC:16875]
Coordinates
chr27:2425079-2426010:+
Coord C1 exon
chr27:2425079-2425105
Coord A exon
chr27:2425106-2425789
Coord C2 exon
chr27:2425790-2426010
Length
684 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
GGACTTTCCCCTCCCCGCAGCTC
3' ss Score
10.36
Exon sequences
Seq C1 exon
TGGAGGAGAGCAGCTTCTCCAGGGCAG
Seq A exon
GTGAGTGGCACCGTCAGCCCGAGCACAGCACTAGGAGCTGGAACTGGTCCTGCCAGACTGAGCTGCAGCATGGGTTGTGTGAACAACATAAAAATGGTGGATTTGGGTGGGAAACCGTAGAATCAGAACAGTTGGAAAAGACCTCTAAGATCCTCATCTAACCCCAACCCATTCCCACCATGCCTGCTTTGTCCCCATATCTCCACAGTTCACCACCACCAGGGTCAGTGACTCCCCCACCTCCCTGGCAGCCTGTGCCAATGCATCACCACTCTTCCAGAGGAGAAATTTCTCATAAGATCCAACCTGACCCTCCCCTGGTTCAGCTTAAGGCCAATCCCATCCCCAGGCATTTGTGAGTCCTTGGAGGAGCACATCTGCGAGCCCTTTGCTGGGACCCCCTGCCCTTCTGGAGGTGCCACATCAGATGGGATCCTATAGATCCAGCCCTGGCAGCTGCCAGATGTGAACACCCATCAGGACCGACCCAGAGAGGCTGTCCCAGAGCTCCGCCATGGGCACGATGCCCCCAGAACACCCCAGCGCTGTCCCTACCTGCCCCATTCTATCTACCCACCCTCAAGGAGAGCCCCCAACAGGAGCTCCCCCAGGGCCAGCCTGGTGCTTGGGCAAGGACTTGAGGGAACAGCGTCAGTATTTCACTGGACTTTCCCCTCCCCGCAG
Seq C2 exon
CTCTGCCGGAGAACACGACGGCCATCGCGGTGGTGGTGCTGTCGGCGCTGGCGCTGAGCGCTCTGCTGGGCATCGCCATCTTCCTGTACAAGCGGCGGAGGAGCTCCGAGCGTGGAGCCTTCGAGAGCGCCCGCTACAGCCGCACCACCTCCAACCCTAGCGAAGCGGCCGAGAAGAACATCTTGGTGTCAGACATGGAGATGAACGAGCAGCAGGACTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000461:ENSGALT00000000627:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.288
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAGAGCAGCTTCTCCAGG
R:
TTAGTCCTGCTGCTCGTTCAT
Band lengths:
246-930
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]