RnoALTA0025040-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000037188 | Mug1
Description
murinoglobulin 1 [Source:RGD Symbol;Acc:621366]
Coordinates
chr4:154723747-154725531:+
Coord C1 exon
chr4:154723747-154723970
Coord A exon
chr4:154725460-154725462
Coord C2 exon
chr4:154725463-154725531
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
GTAATCGCCTGTTACTGCAGCAG
3' ss Score
3.89
Exon sequences
Seq C1 exon
ACAACTCCATCCACTGGGAAAGACCTCAGAAACCCACAAAATCAGAGGGTTATCTGTACACACCCCAGGCTTCCTCTGCTGAAGTAGAGATGAGTGCCTATGTCGTCTTAGCTCGCCTCACTGCCCAGCCAGCCCCATCCCCTGAGGACCTGGCTTTGTCAATGGGCACCATCAAGTGGCTCACAAAGCAGCAGAATTCCCATGGCGGCTTCTCCTCCACACAG
Seq A exon
CAG
Seq C2 exon
GTCTCATTACCAGACATTCCTGGGAACTATACCGTCAGTGTGTCAGGGGAAGGATGTGTGTATGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000037188-119-144,119-143-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.247 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(28.8=100)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCAGCAGAATTCCCATGGC
R:
ACACATCCTTCCCCTGACACA
Band lengths:
98-101
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]