RnoALTA0025272-2/4 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000025757 | Myh6
Description
myosin heavy chain 6 [Source:RGD Symbol;Acc:62029]
Coordinates
chr15:33605654-33606227:-
Coord C1 exon
chr15:33606093-33606227
Coord A exon
chr15:33605742-33605744
Coord C2 exon
chr15:33605654-33605741
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
ACCTTTTATTTCTTTCTCAGCAG
3' ss Score
7.84
Exon sequences
Seq C1 exon
GAGGAACAGGCCAACACCAACCTGTCCAAGTTCCGCAAGGTGCAGCACGAGCTGGATGAGGCAGAGGAGAGGGCGGACATTGCCGAGTCCCAGGTCAACAAGCTGCGGGCCAAGAGCCGTGACATTGGCGCCAAG
Seq A exon
CAG
Seq C2 exon
AAAATGCACGATGAGGAATAACCTGTCCAGCAGAAAGAGCCTCGCTGTTGCTATCCCACAATAAATATGAATGCTTGACTTTGCCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025757-77-87,77-86,77-85,77-84-2/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.969 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PD(4.7=88.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGTCCCAGGTCAACAAGC
R:
TAGCAACAGCGAGGCTCTTTC
Band lengths:
105-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]