RnoINT0096519 @ rn6
Intron Retention
Gene
ENSRNOG00000025757 | Myh6
Description
myosin heavy chain 6 [Source:RGD Symbol;Acc:62029]
Coordinates
chr15:33605654-33606227:-
Coord C1 exon
chr15:33606093-33606227
Coord A exon
chr15:33605742-33606092
Coord C2 exon
chr15:33605654-33605741
Length
351 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
TTTTATTTCTTTCTCAGCAGAAA
3' ss Score
8.7
Exon sequences
Seq C1 exon
GAGGAACAGGCCAACACCAACCTGTCCAAGTTCCGCAAGGTGCAGCACGAGCTGGATGAGGCAGAGGAGAGGGCGGACATTGCCGAGTCCCAGGTCAACAAGCTGCGGGCCAAGAGCCGTGACATTGGCGCCAAG
Seq A exon
GTGGGTTCCTGCCCTCGAATTACCAGTCATGCTCTCACCAGGATACACCTGTAGGCGTCATGCTCTGAACAGCTACATGTGTGTCCCATGTGTATTTAGACATAAAATAGGCAATGCATACAACCCGAGGGTCCTGCAGACACCTATAACCTGCGAATCCACTCTCCCACTCCAAACGGCCCCAGATCTGTGTTCTAAACTACAAGCACCACCATCATGGGACTTCAAGACTCCTGAGGTTTAACTCCTCCCTTTCCAAGGGCATCTTCCTAGAGCCACTGAAATCCCTAGAGATTCCTCCCCAGACTATCTTGCCCGTTGGCCTCACACCTTTTATTTCTTTCTCAGCAG
Seq C2 exon
AAAATGCACGATGAGGAATAACCTGTCCAGCAGAAAGAGCCTCGCTGTTGCTATCCCACAATAAATATGAATGCTTGACTTTGCCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025757:ENSRNOT00000023302:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.969 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PD(4.7=88.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAACAGGCCAACACCAAC
R:
ACAGGCAAAGTCAAGCATTCA
Band lengths:
223-574
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]