HsaINT0107829 @ hg19
Intron Retention
Gene
ENSG00000197616 | MYH6
Description
myosin, heavy chain 6, cardiac muscle, alpha [Source:HGNC Symbol;Acc:7576]
Coordinates
chr14:23851199-23851771:-
Coord C1 exon
chr14:23851637-23851771
Coord A exon
chr14:23851273-23851636
Coord C2 exon
chr14:23851199-23851272
Length
364 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
ACCTCTTATTCTTTTTGCAGCAA
3' ss Score
10.26
Exon sequences
Seq C1 exon
GAGGAGCAAGCCAACACCAACCTGTCCAAGTTCCGCAAGGTGCAGCATGAGCTGGATGAGGCAGAGGAGCGGGCGGACATCGCTGAGTCCCAGGTCAACAAGCTTCGAGCCAAGAGCCGTGACATTGGTGCCAAG
Seq A exon
GTGGGTCCCTCCCCTGGGCTTCACTAGTCACTTCCACATTAGCATGCCCCCTGATATGGGTGCCCTTCAGAGTGGGCACTGCTTGCCCTATATGTAGGCAGTTCTGAGGGTCCCATAGCTTACATAACCTGAGAATCCACTCTCCTGCTCAAAACAGCCCCCCACTGACTGGAACTTCTGCAGAGATCCCCAGTTCCATCCCCCTAAACCACAAGTGCCTCTAACGTGGGACCACAGGATCCCTGGGGCCCTGCCTCTCCCTCCAAGGGCATCTCCCTTAGGCCTCTGAAAGCCCCAGGGATTTGTCCCCACACACTTCTCCCTCTTGCCAGCTGCCCCCTCACACCTCTTATTCTTTTTGCAG
Seq C2 exon
CAAAAAATGCACGATGAGGAGTGACACTGCCTCGGGAACCTCACTCTTGCCAACCTGTAATAAATATGAGTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197616-MYH6:NM_002471:38
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.956 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PD(4.7=88.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAGCAAGCCAACACCAAC
R:
GGCACTCATATTTATTACAGGTTGGC
Band lengths:
209-573
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)