HsaINT0107829 @ hg38
Intron Retention
Gene
ENSG00000197616 | MYH6
Description
myosin heavy chain 6 [Source:HGNC Symbol;Acc:HGNC:7576]
Coordinates
chr14:23382019-23382562:-
Coord C1 exon
chr14:23382428-23382562
Coord A exon
chr14:23382064-23382427
Coord C2 exon
chr14:23382019-23382063
Length
364 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
ACCTCTTATTCTTTTTGCAGCAA
3' ss Score
10.26
Exon sequences
Seq C1 exon
GAGGAGCAAGCCAACACCAACCTGTCCAAGTTCCGCAAGGTGCAGCATGAGCTGGATGAGGCAGAGGAGCGGGCGGACATCGCTGAGTCCCAGGTCAACAAGCTTCGAGCCAAGAGCCGTGACATTGGTGCCAAG
Seq A exon
GTGGGTCCCTCCCCTGGGCTTCACTAGTCACTTCCACATTAGCATGCCCCCTGATATGGGTGCCCTTCAGAGTGGGCACTGCTTGCCCTATATGTAGGCAGTTCTGAGGGTCCCATAGCTTACATAACCTGAGAATCCACTCTCCTGCTCAAAACAGCCCCCCACTGACTGGAACTTCTGCAGAGATCCCCAGTTCCATCCCCCTAAACCACAAGTGCCTCTAACGTGGGACCACAGGATCCCTGGGGCCCTGCCTCTCCCTCCAAGGGCATCTCCCTTAGGCCTCTGAAAGCCCCAGGGATTTGTCCCCACACACTTCTCCCTCTTGCCAGCTGCCCCCTCACACCTCTTATTCTTTTTGCAG
Seq C2 exon
CAAAAAATGCACGATGAGGAGTGACACTGCCTCGGGAACCTCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197616:ENST00000356287:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.956 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PD(4.7=88.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development