MmuINT0103559 @ mm10
Intron Retention
Gene
ENSMUSG00000040752 | Myh6
Description
myosin, heavy polypeptide 6, cardiac muscle, alpha [Source:MGI Symbol;Acc:MGI:97255]
Coordinates
chr14:54941981-54942487:-
Coord C1 exon
chr14:54942353-54942487
Coord A exon
chr14:54942002-54942352
Coord C2 exon
chr14:54941981-54942001
Length
351 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TCTTACTCCTTTCTCAGCAGAAG
3' ss Score
7.02
Exon sequences
Seq C1 exon
GAGGAGCAGGCCAACACCAACCTGTCCAAGTTCCGCAAGGTGCAGCACGAGCTGGATGAGGCGGAGGAGAGGGCGGACATCGCCGAGTCCCAGGTCAACAAGCTGCGGGCCAAGAGCCGGGACATTGGTGCCAAG
Seq A exon
GTGAGTTCCTCCCTTGGAACTGCTAGTCACGCGCTCATCAGGATGCCCCTGCAAGCATGATGCTCTGAACAGCTACGTGTGTATCCCATGTGCATTTAGACATAGAATAGGCATACATACAACCGAAGGGTCCCACAGACACCTGTAACCTGAGAGTCCACTCTCCCACTTGAAGTGGGCCCCAGATCTGTGTTCTAAACTACAAGCACTGATATCATGAGACTTCAAGACTGCTGAGGTTCAACCCCTCCCTTCCCAAGGGCATTTTATTAGAGCCACTGAAATCCCTAGAAATTCCTCCCCAGGCCATCGTACCCACTGACCTCACATCTCTTACTCCTTTCTCAGCAG
Seq C2 exon
AAGATGCACGACGAGGAATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040752:ENSMUST00000081857:38
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.956 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PD(4.7=88.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types