MmuINT0103559 @ mm9
Intron Retention
Gene
ENSMUSG00000040752 | Myh6
Description
myosin, heavy polypeptide 6, cardiac muscle, alpha [Source:MGI Symbol;Acc:MGI:97255]
Coordinates
chr14:55560758-55561324:-
Coord C1 exon
chr14:55561190-55561324
Coord A exon
chr14:55560839-55561189
Coord C2 exon
chr14:55560758-55560838
Length
351 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TCTTACTCCTTTCTCAGCAGAAG
3' ss Score
7.02
Exon sequences
Seq C1 exon
GAGGAGCAGGCCAACACCAACCTGTCCAAGTTCCGCAAGGTGCAGCACGAGCTGGATGAGGCGGAGGAGAGGGCGGACATCGCCGAGTCCCAGGTCAACAAGCTGCGGGCCAAGAGCCGGGACATTGGTGCCAAG
Seq A exon
GTGAGTTCCTCCCTTGGAACTGCTAGTCACGCGCTCATCAGGATGCCCCTGCAAGCATGATGCTCTGAACAGCTACGTGTGTATCCCATGTGCATTTAGACATAGAATAGGCATACATACAACCGAAGGGTCCCACAGACACCTGTAACCTGAGAGTCCACTCTCCCACTTGAAGTGGGCCCCAGATCTGTGTTCTAAACTACAAGCACTGATATCATGAGACTTCAAGACTGCTGAGGTTCAACCCCTCCCTTCCCAAGGGCATTTTATTAGAGCCACTGAAATCCCTAGAAATTCCTCCCCAGGCCATCGTACCCACTGACCTCACATCTCTTACTCCTTTCTCAGCAG
Seq C2 exon
AAGATGCACGACGAGGAATAACCTCTCCAGCAGACCCTCGCTGTGGCCAATCCACAATAAACATAAACGTTCGACTCTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040752-Myh6:NM_001164171:38
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.956 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PD(4.7=88.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCAGGCCAACACCAAC
R:
GGCAGAGTCGAACGTTTATGT
Band lengths:
214-565
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: