BtaINT0097346 @ bosTau6
Intron Retention
Gene
ENSBTAG00000040053 | MYH7
Description
myosin-7 [Source:RefSeq peptide;Acc:NP_777152]
Coordinates
chr10:21376542-21377051:+
Coord C1 exon
chr10:21376542-21376676
Coord A exon
chr10:21376677-21377027
Coord C2 exon
chr10:21377028-21377051
Length
351 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
CACCTTTTATTCTTTCTCAGCAA
3' ss Score
7.6
Exon sequences
Seq C1 exon
GAGGAACAGGCCAACACCAACCTGTCCAAGTTCCGCAAGGTGCAGCACGAGCTGGACGAGGCGGAGGAGCGGGCGGACATCGCCGAGTCCCAGGTCAACAAGCTGCGGGCCAAGAGCCGCGACATCGGCGCCAAG
Seq A exon
GTGGGTCCCTCCCCAGGCCCTGCTACTCACCCCCATGGCAGCACAGCCCCAACATCAGTGGCCCCCAGAGTGGGCACTGCATCCTGTATGTGGTTATGCATCCTGAGGGTCCCGCACCCCCCACATCTGGGCATCCCCCTCCTGCTCAGACAAGCCCCGTACAGGCTGGAACCTCCTTAGAAAGTCCAGTCCCACCCCACCTATACCACAAAGACCTCTAAAGGGGACCCCAAGATTCCCAAGGCCTGAGCCTCTCCCCCTAAGGGCATCTCCCTTAGGCCCCTGAAAGCCCTGGAGATTTCTCCCCACACCCTTCCTTCCTGTTCCCTCACACCTTTTATTCTTTCTCAG
Seq C2 exon
CAAAAAATGCATGACGAGGAGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040053:ENSBTAT00000007359:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.956 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PD(4.7=88.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development