GgaINT0132893 @ galGal4
Intron Retention
Gene
ENSGALG00000013781 | MYH7
Description
Gallus gallus myosin, heavy chain 7, cardiac muscle, beta (MYH7), mRNA. [Source:RefSeq mRNA;Acc:NM_001001302]
Coordinates
chr19:25519-25794:+
Coord C1 exon
chr19:25519-25653
Coord A exon
chr19:25654-25744
Coord C2 exon
chr19:25745-25794
Length
91 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
TCCATCTTCTCTCCCAATAGAAA
3' ss Score
10.08
Exon sequences
Seq C1 exon
GAAGAGCAGGCCAACTCCAACCTGGCCAAGTTCCGCAAGGTGCAGCATGAGCTGGATGAGGCGGAGGAACGTGCTGACATGGCTGAGTCTCAGGTTAACAAGCTGCGGGCACGGAGCCGTGACATTGGGGCCAAG
Seq A exon
GTGGGTTTCTGCCCCACATCCCTGCCCCAGCTTCACCTCATATCTGTCCTTCATGTGCCTCATCACCTCCCTCCATCTTCTCTCCCAATAG
Seq C2 exon
AAAGGACTCAATGAGGAATGAAAGCTCCAGATGCTCTGCCTTCCAGCCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013781:ENSGALT00000022380:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.978 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PD(4.7=88.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGAGCAGGCCAACTCCAAC
R:
GCAGAGCATCTGGAGCTTTCA
Band lengths:
174-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]