GgaINT0132893 @ galGal3
Intron Retention
Gene
ENSGALG00000013781 | Q90WH5_CHICK
Description
NA
Coordinates
chr19:20118-20454:+
Coord C1 exon
chr19:20118-20252
Coord A exon
chr19:20253-20343
Coord C2 exon
chr19:20344-20454
Length
91 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
TCCATCTTCTCTCCCAATAGAAA
3' ss Score
10.08
Exon sequences
Seq C1 exon
GAAGAGCAGGCCAACTCCAACCTGGCCAAGTTCCGCAAGGTGCAGCATGAGCTGGATGAGGCGGAGGAACGTGCTGACATGGCTGAGTCTCAGGTTAACAAGCTGCGGGCACGGAGCCGTGACATTGGGGCCAAG
Seq A exon
GTGGGTTTCTGCCCCACATCCCTGCCCCAGCTTCACCTCATATCTGTCCTTCATGTGCCTCATCACCTCCCTCCATCTTCTCTCCCAATAG
Seq C2 exon
AAAGGACTCAATGAGGAATGAAAGCTCCAGATGCTCTGCCTTCCAGCCCCAATCTCTGATCAATTCCCTTTGGATCTCTCTGCTTTCAGCCAATAAAAATTGTTGAGCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013781:ENSGALT00000040718:38
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.978 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PD(4.7=88.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACTCCAACCTGGCCAAGTT
R:
TCAGAGATTGGGGCTGGAAGG
Band lengths:
183-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]