MmuALTA0011539-3/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000040752 | Myh6
Description
myosin, heavy polypeptide 6, cardiac muscle, alpha [Source:MGI Symbol;Acc:MGI:97255]
Coordinates
chr14:54941898-54942487:-
Coord C1 exon
chr14:54942353-54942487
Coord A exon
chr14:54941999-54942004
Coord C2 exon
chr14:54941898-54941998
Length
6 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
ATCTCTTACTCCTTTCTCAGCAG
3' ss Score
6.47
Exon sequences
Seq C1 exon
GAGGAGCAGGCCAACACCAACCTGTCCAAGTTCCGCAAGGTGCAGCACGAGCTGGATGAGGCGGAGGAGAGGGCGGACATCGCCGAGTCCCAGGTCAACAAGCTGCGGGCCAAGAGCCGGGACATTGGTGCCAAG
Seq A exon
CAGAAG
Seq C2 exon
ATGCACGACGAGGAATAACCTCTCCAGCAGACCCTCGCTGTGGCCAATCCACAATAAACATAAACGTTCGACTCTGCCTGCACCCTGTCCTTCCTACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040752-74-77,74-76,74-75-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.956 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PD(4.7=88.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGAGCCGGGACATTGGTG
R:
GCAGGCAGAGTCGAACGTTTA
Band lengths:
106-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types