RnoALTA0027805-1/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000019760 | Oxnad1
Description
oxidoreductase NAD-binding domain containing 1 [Source:RGD Symbol;Acc:1311534]
Coordinates
chr16:8217063-8231724:+
Coord C1 exon
chr16:8217063-8217204
Coord A exon
NA
Coord C2 exon
chr16:8231627-8231724
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
TATCCTGCGCCACTCGGCAGATC
3' ss Score
5.88
Exon sequences
Seq C1 exon
GGTTGATTTCTTCATCCCAGGAGTTTCAGTGGTTGGTGGGTTTTCAATTTGCTCCAGTCCCCAACAGCTAGAACGAGAGAGAATAATAGAATTGGCAGTGAAATACACGAACCATCCTCCTGCTGTCTGGGTTCACAATAAG
Seq A exon
NA
Seq C2 exon
ATCTCCACCGGGACCACAAAGAAAAAAGGAGAGGCTATGATATAGGAACAATAAAACTGTTCTACAGCGCAAAGAACACCAGTGAACTCCTGTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019760-8-16,8-15,8-14-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.009
Domain overlap (PFAM):
C1:
PF0097019=FAD_binding_6=PD(54.8=83.3)
A:
NA
C2:
PF0097019=FAD_binding_6=PD(11.0=12.3),PF080307=NAD_binding_6=WD(100=70.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCAGTCCCCAACAGCTAGA
R:
TTCACTGGTGTTCTTTGCGCT
Band lengths:
177-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]