RnoALTA0027805-3/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000019760 | Oxnad1
Description
oxidoreductase NAD-binding domain containing 1 [Source:RGD Symbol;Acc:1311534]
Coordinates
chr16:8217063-8231724:+
Coord C1 exon
chr16:8217063-8217204
Coord A exon
chr16:8231482-8231626
Coord C2 exon
chr16:8231627-8231724
Length
145 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
TCTTTTCTTTCTTGCTTCAGTGC
3' ss Score
9.59
Exon sequences
Seq C1 exon
GGTTGATTTCTTCATCCCAGGAGTTTCAGTGGTTGGTGGGTTTTCAATTTGCTCCAGTCCCCAACAGCTAGAACGAGAGAGAATAATAGAATTGGCAGTGAAATACACGAACCATCCTCCTGCTGTCTGGGTTCACAATAAG
Seq A exon
TGCACACTTGACTCAGAAGTGGCTCTCAGAGTAGGTGGAGAGTTCTTCTTTGACCCTCAGCCCACAGATGCCCCTCGAAACCTCGTCTTGATTGCTGGAGGGGTTGGGATTAACCCCCTGCTTTCTATCCTGCGCCACTCGGCAG
Seq C2 exon
ATCTCCACCGGGACCACAAAGAAAAAAGGAGAGGCTATGATATAGGAACAATAAAACTGTTCTACAGCGCAAAGAACACCAGTGAACTCCTGTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019760-8-16,8-15,8-14-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.009
Domain overlap (PFAM):
C1:
PF0097019=FAD_binding_6=PD(54.8=83.3)
A:
NA
C2:
PF0097019=FAD_binding_6=PD(11.0=12.3),PF080307=NAD_binding_6=WD(100=70.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTGATTTCTTCATCCCAGGAGT
R:
ACAGGAGTTCACTGGTGTTCT
Band lengths:
235-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]