DreALTA0019388-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000062664 | oxnad1
Description
oxidoreductase NAD-binding domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-060503-199]
Coordinates
chr19:20698328-20703805:+
Coord C1 exon
chr19:20698328-20698469
Coord A exon
chr19:20703569-20703628
Coord C2 exon
chr19:20703629-20703805
Length
60 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGG
5' ss Score
6.38
3' ss Seq
CTAATCCTCTTCTGTTGCAGTGC
3' ss Score
9.15
Exon sequences
Seq C1 exon
GGTGGATTTCTTCATCCCAGGTGTGGATACTGTGGGCGGTTTCTCCATTTGCTCAAGTCCAGGTCTGCTGAAGAGAGAAGGAGTGATTGAACTGGCTGTAAAATATGCGCGCCATCCTCCAGCACACTGGATTCACACCGAA
Seq A exon
TGCTCTGTGGACTCTCAGGTAGCCGTGAGGGTGGGGGGTAATTTCTACTTTGACCCTCAG
Seq C2 exon
CCTTCTAACCCTGTGGTGGACCTGTTGCTGGTGGCTGGAGGTGTTGGAATTAACCCTCTATACTCCATCCTGCTACATGCAGCTGATCTGCACAGACACACTCACAGTCACAGATACACACCAGGACACACACACCTGTGTTACAGCGCCAAGAACACTACAGAGCTGCTCTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062664-7-10,7-9-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0097019=FAD_binding_6=FE(49.5=100)
A:
NA
C2:
PF0097019=FAD_binding_6=PD(14.7=17.7),PF0017516=NAD_binding_1=PU(45.0=62.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGCTCAAGTCCAGGTCTGC
R:
AATTCCAACACCTCCAGCCAC
Band lengths:
146-206
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]