MmuALTA0012637-2/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000021906 | Oxnad1
Description
oxidoreductase NAD-binding domain containing 1 [Source:MGI Symbol;Acc:MGI:1916953]
Coordinates
chr14:32096487-32099500:+
Coord C1 exon
chr14:32096487-32096628
Coord A exon
chr14:32099389-32099448
Coord C2 exon
chr14:32099449-32099500
Length
60 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
TCTTTTCTTTCTTACTTCAGTGC
3' ss Score
9.03
Exon sequences
Seq C1 exon
GGTTGATTTCTTCATCCCAGGAGTCTCAGTGGTTGGTGGGTTTTCAATTTGCTCCAGTCCCCAACGGCTAGAACGAGACAGAATAATAGAACTGGCGGTGAAATATGCAGACCACCCTCCTGCTGTCTGGGTTCACAATAAG
Seq A exon
TGCACACTTGACTCTGAAGTGGCTCTCAGAGTAGGTGGAGAGTTCTTCTTTGACCCTCAG
Seq C2 exon
CCCACAGATGCCCCTCGAAACCTCATCTTGATTGCTGGAGGGGTCGGAATTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021906-14-22,14-21,14-20-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0097019=FAD_binding_6=PD(53.5=80.9)
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCTCAGTGGTTGGTGGGTT
R:
GATGAGGTTTCGAGGGGCATC
Band lengths:
148-208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types