GgaALTA0005953-1/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000011239 | OXNAD1
Description
oxidoreductase NAD-binding domain-containing protein 1 [Source:RefSeq peptide;Acc:NP_001186567]
Coordinates
chr2:34820423-34822976:+
Coord C1 exon
chr2:34820423-34820564
Coord A exon
NA
Coord C2 exon
chr2:34822940-34822976
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
3' ss Seq
TATCTTCTTTTCCATCCTAGTGT
3' ss Score
9.08
Exon sequences
Seq C1 exon
GGTTGATTTCTTTATTCCTGGCGTATCTGTGATTGGGGGATTCTCAATGTGTTCAAGCCCTGGTCTGCTGGAACGAGAAGGAGTGTTAGAGCTTGCAGTGAAGTACACTGACCATCCTCCTGCTCACTGGATCCACACTGAG
Seq A exon
NA
Seq C2 exon
TGTACTCTTGACTCAGAAGTGGCTCTGCGAGTGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011239-16-7,16-6-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0097019=FAD_binding_6=FE(51.6=100)
A:
NA
C2:
PF0097019=FAD_binding_6=PD(11.0=76.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]