HsaALTA1036798-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000154814 | OXNAD1
Description
oxidoreductase NAD binding domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25128]
Coordinates
chr3:16294856-16301786:+
Coord C1 exon
chr3:16294856-16294997
Coord A exon
chr3:16301626-16301722
Coord C2 exon
chr3:16301723-16301786
Length
97 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGC
5' ss Score
9.89
3' ss Seq
TCTTTTCTTTCCTGCCTTAGTGT
3' ss Score
9.47
Exon sequences
Seq C1 exon
GGTTGATTTCTTTATTCCAGGAGTCTCTGTGGTTGGTGGGTTTTCAATATGCTCCAGTCCCAGACTGCTAGAACAAGAGAGAGTGATAGAATTGGCAGTGAAATATACGAACCACCCTCCTGCCCTCTGGGTTCACAATACG
Seq A exon
TGTACACTTGACTGTGAAGTGGCTGTGAGAGTGGGTGGAGAGTTCTTCTTTGACCCTCAGCCTGCGGATGCCTCTAGAAACCTCGTGTTGATTGCAG
Seq C2 exon
GAGGAGTCGGAATTAACCCTCTGCTTTCCATCCTGCGGCACGCAGCAGATCTCCTCAGAGAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000154814-14-21,14-20-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0017516=NAD_binding_1=PU(42.1=63.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCTCTGTGGTTGGTGGGTT
R:
TCTCTGAGGAGATCTGCTGCG
Band lengths:
182-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains