RnoALTA0028654-3/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000014243 | Pear1
Description
platelet endothelial aggregation receptor 1 [Source:RGD Symbol;Acc:1305653]
Coordinates
chr2:187122258-187123456:-
Coord C1 exon
chr2:187123213-187123456
Coord A exon
chr2:187122331-187122378
Coord C2 exon
chr2:187122258-187122330
Length
48 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
CCTCACCCCCTATTCCACAGCTG
3' ss Score
7.86
Exon sequences
Seq C1 exon
AGTGTGCTCCTGGAATGTGGGGACCACAGTGTGACAGGCTCTGCCTCTGTGGCAACAGCAGTTCCTGTGATCCCAGGAGTGGGGTGTGTTTTTGCCCCTCTGGCCTGCAGCCCCCCGACTGCCTTCAGCCTTGCCCCGATGGCCACTATGGTCCTGCCTGCCAGTTTGATTGCCATTGCTATGGGGCATCCTGTGACCCCCGGGATGGAGCCTGCTTCTGCCCCCCAGGGAGAACAGGACCCAG
Seq A exon
CTGTAATGTGCCCTGTTCACAGGGCACTGATGGCTTCTTCTGCCCCAG
Seq C2 exon
AACTTATCCTTGCCAAAATGGAGGTGTTCCTCAGGGCTCTCAAGGCTCCTGCAGCTGCCCACCGGGCTGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014243-13-15,13-14,13-13-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGCCTGCCAGTTTGATTG
R:
CCTTGAGAGCCCTGAGGAACA
Band lengths:
138-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]