RnoEX0064795 @ rn6
Exon Skipping
Gene
ENSRNOG00000014243 | Pear1
Description
platelet endothelial aggregation receptor 1 [Source:RGD Symbol;Acc:1305653]
Coordinates
chr2:187122258-187123715:-
Coord C1 exon
chr2:187123623-187123715
Coord A exon
chr2:187123213-187123456
Coord C2 exon
chr2:187122258-187122378
Length
244 bp
Sequences
Splice sites
3' ss Seq
TCCCATTTTCTGTTCTGCAGAGT
3' ss Score
9.82
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
CACTCTGTGCCCAGGAGTGTGTCCACGGTCGCTGTGTGGCTCCTAATCGGTGCCAGTGTGCACCAGGCTGGCGGGGTGACGACTGTTCCAGTG
Seq A exon
AGTGTGCTCCTGGAATGTGGGGACCACAGTGTGACAGGCTCTGCCTCTGTGGCAACAGCAGTTCCTGTGATCCCAGGAGTGGGGTGTGTTTTTGCCCCTCTGGCCTGCAGCCCCCCGACTGCCTTCAGCCTTGCCCCGATGGCCACTATGGTCCTGCCTGCCAGTTTGATTGCCATTGCTATGGGGCATCCTGTGACCCCCGGGATGGAGCCTGCTTCTGCCCCCCAGGGAGAACAGGACCCAG
Seq C2 exon
CTGTAATGTGCCCTGTTCACAGGGCACTGATGGCTTCTTCTGCCCCAGAACTTATCCTTGCCAAAATGGAGGTGTTCCTCAGGGCTCTCAAGGCTCCTGCAGCTGCCCACCGGGCTGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014243_MULTIEX3-3/3=2-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126612=hEGF=WD(100=40.6)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTCTGTGCCCAGGAGTGT
R:
GCTGCAGGAGCCTTGAGAG
Band lengths:
196-440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]