MmuEX7001977 @ mm10
Exon Skipping
Gene
ENSMUSG00000028073 | Pear1
Description
platelet endothelial aggregation receptor 1 [Source:MGI Symbol;Acc:MGI:1920432]
Coordinates
chr3:87757144-87758417:-
Coord C1 exon
chr3:87758325-87758417
Coord A exon
chr3:87757927-87758170
Coord C2 exon
chr3:87757144-87757264
Length
244 bp
Sequences
Splice sites
3' ss Seq
GTCCATTTTCTCTTCCACAGAGT
3' ss Score
10.3
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
CACTCTGTGCCCAGGAGTGTGTCCATGGTCGCTGTGTGGCTCCGAATCAGTGCCAGTGTGCACCAGGCTGGCGGGGTGGCGACTGCTCCAGCG
Seq A exon
AGTGTGCCCCGGGAATGTGGGGACCACAGTGTGACAAGTTCTGCCACTGTGGCAACAACAGTTCCTGTGATCCCAAGAGTGGGACGTGCTTTTGCCCCTCTGGCCTGCAGCCCCCCAACTGCCTTCAGCCCTGCCCTGCCGGCCACTATGGTCCTGCCTGCCAGTTTGATTGCCAGTGCTATGGGGCATCCTGTGACCCCCAGGATGGAGCCTGTTTCTGCCCTCCAGGGAGAGCAGGACCCAG
Seq C2 exon
CTGTAATGTGCCCTGTTCACAGGGCACTGATGGCTTCTTCTGCCCCAGAACCTATCCTTGCCAAAATGGAGGTGTTCCTCAGGGCTCCCAAGGCTCCTGCAGCTGCCCACCGGGCTGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028073-'23-25,'23-23,24-25=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=0.023 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTCTGTGCCCAGGAGTGT
R:
GCTGCAGGAGCCTTGGGAG
Band lengths:
196-440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types