GgaEX1042992 @ galGal4
Exon Skipping
Gene
ENSGALG00000028622 | PEAR1
Description
platelet endothelial aggregation receptor 1 [Source:HGNC Symbol;Acc:HGNC:33631]
Coordinates
chr25:409125-410050:-
Coord C1 exon
chr25:409958-410050
Coord A exon
chr25:409313-409559
Coord C2 exon
chr25:409125-409239
Length
247 bp
Sequences
Splice sites
3' ss Seq
CGGTGTTCTCACTTGCACAGCGT
3' ss Score
7.68
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
CGCGCTGCACCCAGGAGTGCGTCCACGGGCGGTGCGTGGCCCCCGAGCGTTGCCAGTGTGAGCCGGGCTGGAGGGGACACGACTGCTCCAGCG
Seq A exon
CGTGTGATGAGCGTTTGTGGGGCAAGAACTGCGAGCACCACTGTGACTGCCACCACGGGGCCCCCTGCAATCCCCTGAGTGGGGTCTGTGCCTGCCCCCCTGGCTTCACCCCCCCACTGTGCCACCAGCCCTGCCCGCCCGGCTCCTACGGCCCCGACTGCCGCCTGCACTGCCCATGCCACCACGGGGCCCCCTGCAACGCCTCCACTGGTGCCTGCCTCTGCCCCCCAGGACTTGCTGGCCCACT
Seq C2 exon
CTGTGAGGTGCTGTGCCCCGAGGGGACACCGTGCGGCACCCACTGCCCCTGCCAGAATGGGGGTATCTGCCACCCCCCCGGCTCCAGCACCTGCGTCTGCCCCCATGGATGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028622-'6-7,'6-5,7-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0005319=Laminin_EGF=PU(70.7=34.9)
C2:
PF0005319=Laminin_EGF=PD(26.8=28.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCACCCAGGAGTGCGTC
R:
CCATCCATGGGGGCAGACG
Band lengths:
200-447
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]