BtaEX6014283 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012405 | PEAR1
Description
Bos taurus platelet endothelial aggregation receptor 1 (PEAR1), mRNA. [Source:RefSeq mRNA;Acc:NM_001101300]
Coordinates
chr3:13994181-13995644:-
Coord C1 exon
chr3:13995552-13995644
Coord A exon
chr3:13995039-13995282
Coord C2 exon
chr3:13994181-13994301
Length
244 bp
Sequences
Splice sites
3' ss Seq
TCCCCCCTCTCATCCCCCAGCTT
3' ss Score
10.04
5' ss Seq
CACGTATGT
5' ss Score
7.26
Exon sequences
Seq C1 exon
CGCTTTGTGCTCAGGAGTGTGTCCATGGCCGCTGTGTGGCACCCAATCAGTGCCAATGTGTGCAAGACTGGCGGGGTGACGACTGCTCCAGTG
Seq A exon
CTTGTGCCCCAGGAGTGTGGGGGCCGAAGTGTGACAAGCCCTGCAACTGCGGCAACAGCAGCTCCTGTGACCCCAAGAGTGGGGCATGTTCCTGTCCCTCTGGCCTGCAGCCCCCACACTGCCTTCAGCCCTGCTCCCCTGGCCTCTATGGCCCTGCCTGCCAGTTCAGCTGCCAGTGCCATGGGGCGCCCTGTAACCCCCAGACCGGAGCCTGCCTCTGCCCCCCAGAGAGAACCGGGCCCAC
Seq C2 exon
CTGCGAGGTGTCCTGTTCACCCAGTAGTGTTGGCTTCTCCTGCCCCAGCACTCCGCCTTGCCAAAATGGGGGAGTCTTCCAGGCCTCCCAGGATTCCTGCAGCTGCCCACCTGGATGGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012405-'9-13,'9-12,10-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF126612=hEGF=PU(61.5=19.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTGTGCTCAGGAGTGTGT
R:
CGTCCATCCAGGTGGGCAG
Band lengths:
213-457
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]