RnoEX0064793 @ rn6
Exon Skipping
Gene
ENSRNOG00000014243 | Pear1
Description
platelet endothelial aggregation receptor 1 [Source:RGD Symbol;Acc:1305653]
Coordinates
chr2:187123213-187124407:-
Coord C1 exon
chr2:187124307-187124407
Coord A exon
chr2:187123757-187123834
Coord C2 exon
chr2:187123213-187123456
Length
78 bp
Sequences
Splice sites
3' ss Seq
TCCCTAAGTCTTCATCTCAGGCA
3' ss Score
3.68
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
GGTTGTCTACCGGACTGTGTACCGTCAGGTGGTGAAGATGGACTCCCGCCCACGCCTGCAGTGCTGTGGGGGTTACTACGAGAGCAGTGGAGCCTGTGTCC
Seq A exon
GCAGAGCTGGTGTTTGGGGAGCTGCAGGCCTGGGTACAGGAGGAAATGGATCTGACCTCACAGATTAAAGGTGGGAAG
Seq C2 exon
AGTGTGCTCCTGGAATGTGGGGACCACAGTGTGACAGGCTCTGCCTCTGTGGCAACAGCAGTTCCTGTGATCCCAGGAGTGGGGTGTGTTTTTGCCCCTCTGGCCTGCAGCCCCCCGACTGCCTTCAGCCTTGCCCCGATGGCCACTATGGTCCTGCCTGCCAGTTTGATTGCCATTGCTATGGGGCATCCTGTGACCCCCGGGATGGAGCCTGCTTCTGCCCCCCAGGGAGAACAGGACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014243_MULTIEX3-1/3=C1-3
Average complexity
ME(1-2[100=100])
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.273 C2=0.000
Domain overlap (PFAM):
C1:
PF075468=EMI=PD(39.2=82.9)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000019502fB10509
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGGTGAAGATGGACTCCC
R:
GCAAAAACACACCCCACTCCT
Band lengths:
170-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]