RnoEX0064794 @ rn6
Exon Skipping
Gene
ENSRNOG00000014243 | Pear1
Description
platelet endothelial aggregation receptor 1 [Source:RGD Symbol;Acc:1305653]
Coordinates
chr2:187123213-187124407:-
Coord C1 exon
chr2:187124307-187124407
Coord A exon
chr2:187123623-187123715
Coord C2 exon
chr2:187123213-187123456
Length
93 bp
Sequences
Splice sites
3' ss Seq
TTCATTTTGTCTCTGGCCAGCAC
3' ss Score
6.64
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
GGTTGTCTACCGGACTGTGTACCGTCAGGTGGTGAAGATGGACTCCCGCCCACGCCTGCAGTGCTGTGGGGGTTACTACGAGAGCAGTGGAGCCTGTGTCC
Seq A exon
CACTCTGTGCCCAGGAGTGTGTCCACGGTCGCTGTGTGGCTCCTAATCGGTGCCAGTGTGCACCAGGCTGGCGGGGTGACGACTGTTCCAGTG
Seq C2 exon
AGTGTGCTCCTGGAATGTGGGGACCACAGTGTGACAGGCTCTGCCTCTGTGGCAACAGCAGTTCCTGTGATCCCAGGAGTGGGGTGTGTTTTTGCCCCTCTGGCCTGCAGCCCCCCGACTGCCTTCAGCCTTGCCCCGATGGCCACTATGGTCCTGCCTGCCAGTTTGATTGCCATTGCTATGGGGCATCCTGTGACCCCCGGGATGGAGCCTGCTTCTGCCCCCCAGGGAGAACAGGACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014243_MULTIEX3-2/3=C1-3
Average complexity
ME(1-2[100=100])
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF075468=EMI=PD(39.2=82.9)
A:
PF126612=hEGF=WD(100=40.6)
C2:
NO
Main Skipping Isoform:
ENSRNOT00000019502fB10509
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGGTGAAGATGGACTCCC
R:
GCAAAAACACACCCCACTCCT
Band lengths:
170-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]