DreEX6041456 @ danRer10
Exon Skipping
Gene
ENSDARG00000060753 | pear1
Description
platelet endothelial aggregation receptor 1 [Source:ZFIN;Acc:ZDB-GENE-091230-1]
Coordinates
chr16:30526211-30532587:+
Coord C1 exon
chr16:30526211-30526311
Coord A exon
chr16:30526422-30526514
Coord C2 exon
chr16:30532463-30532587
Length
93 bp
Sequences
Splice sites
3' ss Seq
CTCTGTCTGTGTGTGTGTAGCAC
3' ss Score
8.5
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
GATCACTTATAAAACGCTTTATAGGCAGGTGGTGAAAATGGACTATCGTAGGAGGTATCAGTGCTGTCCTGGCTTTTACGAGAGCAGGAATAAATGCGTCC
Seq A exon
CACGTTGCACTAAGGAGTGTGTCCATGGCCGCTGTGTAGCACCTGATCGCTGCCAGTGTGAGATGGGCTGGCGTGGAGACGACTGTTCCAGCT
Seq C2 exon
CATGTGATGGTCAGCATTGGGGTCCAGGCTGCCGGCGTCTCTGCGAGTGCCAGAATGGAGGAGAGTGTGACGTTCTCACAGGAAACTGTCAGTGTCCAGCAGGATACACTGGTCAACACTGCCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060753-'3-5,'3-3,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF079748=EGF_2=PU(6.5=5.7)
A:
PF079748=EGF_2=PD(90.3=87.5)
C2:
PF126612=hEGF=WD(100=31.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGGTGGTGAAAATGGACT
R:
ATCCTGCTGGACACTGACAGT
Band lengths:
183-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]