HsaEX6034114 @ hg38
Exon Skipping
Gene
ENSG00000187800 | PEAR1
Description
platelet endothelial aggregation receptor 1 [Source:HGNC Symbol;Acc:HGNC:33631]
Coordinates
chr1:156905324-156906720:+
Coord C1 exon
chr1:156905324-156905424
Coord A exon
chr1:156906276-156906368
Coord C2 exon
chr1:156906637-156906720
Length
93 bp
Sequences
Splice sites
3' ss Seq
CACACCCATCTCTGTCCCAGCGC
3' ss Score
6.86
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
GGTTGTATACCGGACCGTGTACCGTCAGGTGGTGAAGACGGACCACCGCCAGCGCCTGCAGTGCTGCCATGGCTTCTATGAGAGCAGGGGGTTCTGTGTCC
Seq A exon
CGCTCTGTGCCCAGGAGTGTGTCCATGGCCGTTGTGTGGCACCCAATCAGTGCCAATGTGTGCCAGGCTGGCGGGGCGACGACTGTTCCAGTG
Seq C2 exon
AGTGTGCCCCAGGAATGTGGGGGCCACAGTGTGACAAGCCCTGCAGCTGCGGCAACAACAGCTCGTGTGATCCCAAGAGTGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187800-'8-16,'8-14,10-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF075468=EMI=PD(39.2=82.9)
A:
PF126612=hEGF=WD(100=40.6)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATACCGGACCGTGTACCGTC
R:
CACTCTTGGGATCACACGAGC
Band lengths:
177-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains