MmuEX0034402 @ mm10
Exon Skipping
Gene
ENSMUSG00000028073 | Pear1
Description
platelet endothelial aggregation receptor 1 [Source:MGI Symbol;Acc:MGI:1920432]
Coordinates
chr3:87757927-87759166:-
Coord C1 exon
chr3:87759094-87759166
Coord A exon
chr3:87758325-87758417
Coord C2 exon
chr3:87757927-87758170
Length
93 bp
Sequences
Splice sites
3' ss Seq
TTCATTTTGTCTCTGGCCAGCAC
3' ss Score
6.64
5' ss Seq
GCGGTAAGC
5' ss Score
8.99
Exon sequences
Seq C1 exon
GTGGTGAAGATGGACTCCCGCCCACGCCTGCAGTGCTGTAGGGGTTACTACGAGAGCAGAGGGGCCTGTGTCC
Seq A exon
CACTCTGTGCCCAGGAGTGTGTCCATGGTCGCTGTGTGGCTCCGAATCAGTGCCAGTGTGCACCAGGCTGGCGGGGTGGCGACTGCTCCAGCG
Seq C2 exon
AGTGTGCCCCGGGAATGTGGGGACCACAGTGTGACAAGTTCTGCCACTGTGGCAACAACAGTTCCTGTGATCCCAAGAGTGGGACGTGCTTTTGCCCCTCTGGCCTGCAGCCCCCCAACTGCCTTCAGCCCTGCCCTGCCGGCCACTATGGTCCTGCCTGCCAGTTTGATTGCCAGTGCTATGGGGCATCCTGTGACCCCCAGGATGGAGCCTGTTTCTGCCCTCCAGGGAGAGCAGGACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028073-'17-23,'17-22,23-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.011 C2=0.023
Domain overlap (PFAM):
C1:
PF075468=EMI=PD(39.2=82.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGTGCTGTAGGGGTTACT
R:
CAGGGCTGAAGGCAGTTGG
Band lengths:
178-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types