DreEX0045905 @ danRer10
Exon Skipping
Gene
ENSDARG00000017229 | megf10
Description
multiple EGF-like-domains 10 [Source:ZFIN;Acc:ZDB-GENE-080506-1]
Coordinates
chr10:16137549-16151102:+
Coord C1 exon
chr10:16137549-16137649
Coord A exon
chr10:16142370-16142462
Coord C2 exon
chr10:16150856-16151102
Length
93 bp
Sequences
Splice sites
3' ss Seq
CTCTCTTGTTTTCGCTGTAGCCC
3' ss Score
9.06
5' ss Seq
GCGGTAAGT
5' ss Score
11.37
Exon sequences
Seq C1 exon
AGTAAGCTACAGAACGGCCTATCGCAGGGGTGAGAAGACAATGCATCGACGCAAGTCTCAGTGCTGCCCAGGTTTCTATGAGAGTGGAGATATATGCGTTC
Seq A exon
CCCACTGTGCTGAGAAATGTGTGCATGGCCGCTGCGTGGCCCCCAACACCTGTCAGTGTGAGCCGGGCTGGGGAGGGGCTGACTGCTCCAGCG
Seq C2 exon
CGTGTGACCGTGATCACTGGGGCCCACACTGCAGTAGCCGGTGTCAGTGTAAGAACGAGGCGCTGTGTAACCCCATCACTGGAGCGTGCATATGTGCACCCGGGTACCATGGCTGGCGATGTGAAGACCTCTGTGACCATTCCACTTATGGCAACAATTGCCAACAGAAATGTCTGTGCCAGAATAATGCTACATGCCACCACATCACAGGCGAATGCGTGTGCAGTCCAGGATACACAGGAGCATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017229-'6-6,'6-5,8-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0005319=Laminin_EGF=WD(100=55.4),PF126612=hEGF=PU(84.6=13.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTATCGCAGGGGTGAGAAGA
R:
CACATATGCACGCTCCAGTGA
Band lengths:
180-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]