GgaEX6050656 @ galGal3
Exon Skipping
Gene
ENSGALG00000014699 | MEGF10
Description
NA
Coordinates
chrZ:55248417-55270422:+
Coord C1 exon
chrZ:55248417-55248517
Coord A exon
chrZ:55256436-55256528
Coord C2 exon
chrZ:55270176-55270422
Length
93 bp
Sequences
Splice sites
3' ss Seq
TCTGTTTCCTTCACTGACAGCTC
3' ss Score
9.49
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
AATCAGCTACCGTACTGCCTACAGACATGGTGAAAAAACAATGTACAGGCGTAAATCCCAGTGCTGCCCTGGATTTTATGAAAGCAGGGAAATGTGTGTCC
Seq A exon
CTCACTGTGCTGACAAATGTGTCCATGGTCGTTGTATTGCTCCAAACACCTGTCAGTGTGAGCCTGGCTGGGGAGGACCCAACTGCTCCAGTG
Seq C2 exon
CCTGCGACAGTGACCACTGGGGACCTCACTGCAGCAGCCGCTGTCAGTGCAAAAACGGAGCCCTGTGCAACCCCATCACTGGTGCCTGCCACTGTGCGTCTGGTTTCAAAGGGTGGCGCTGCGAGGAGCGCTGTGACCAAGGGACATATGGAAATGACTGCCATCAGAAATGTCAGTGTCAGAATGGAGCCACCTGTGACCACGTGACTGGAGAGTGCAGATGTCCTCCTGGATATACCGGAGCCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014699-'2-4,'2-3,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF126612=hEGF=PU(84.6=13.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACAGGCGTAAATCCCAGTGC
R:
TTGAAACCAGACGCACAGTGG
Band lengths:
167-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]