MmuEX0028578 @ mm9
Exon Skipping
Gene
ENSMUSG00000024593 | Megf10
Description
multiple EGF-like-domains 10 [Source:MGI Symbol;Acc:MGI:2685177]
Coordinates
chr18:57350761-57400444:+
Coord C1 exon
chr18:57350761-57350861
Coord A exon
chr18:57371976-57372068
Coord C2 exon
chr18:57400198-57400444
Length
93 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTCCTCTTTGACAGCTC
3' ss Score
10.64
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
AATCAGCTACCGGACAGCCTACCGCCACGGGGAGAAAACCATGTATAGACGCAAATCCCAGTGTTGCCCAGGATTTTATGAAAGCCGAGACATGTGTGTCC
Seq A exon
CTCACTGTGCTGATAAATGTGTCCATGGTCGCTGCATTGCTCCAAACACCTGTCAGTGTGAGCCTGGCTGGGGTGGGACCAACTGTAGCAGTG
Seq C2 exon
CTTGTGATGGTGATCACTGGGGGCCTCACTGCAGCAGCCGATGCCAGTGCAAAAACAGAGCTTTGTGTAACCCCATCACCGGTGCTTGCCACTGCGCTGCGGGCTACCGGGGATGGCGCTGCGAGGACCGTTGTGAACAGGGCACGTACGGTAACGACTGTCACCAAAGATGCCAGTGTCAGAATGGAGCGACCTGTGACCACATCACTGGGGAATGCCGTTGTTCACCTGGGTACACTGGAGCCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024593-'4-6,'4-5,5-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0005319=Laminin_EGF=WD(100=55.4),PF126612=hEGF=PU(84.6=13.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCAGCTACCGGACAGCCTA
R:
CCGGTGATGGGGTTACACAAA
Band lengths:
183-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: