HsaEX0038725 @ hg38
Exon Skipping
Gene
ENSG00000145794 | MEGF10
Description
multiple EGF like domains 10 [Source:HGNC Symbol;Acc:HGNC:29634]
Coordinates
chr5:127340530-127396778:+
Coord C1 exon
chr5:127340530-127340630
Coord A exon
chr5:127369910-127370002
Coord C2 exon
chr5:127396532-127396778
Length
93 bp
Sequences
Splice sites
3' ss Seq
ATTGATTTTCTCTCTGACAGCCC
3' ss Score
8.28
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
AGTCAGCTATCGGACAGCCTATCGACATGGGGAGAAGACTATGTATAGGCGCAAGTCTCAGTGTTGTCCTGGATTTTATGAAAGCGGGGAAATGTGTGTCC
Seq A exon
CCCACTGTGCTGATAAATGTGTCCATGGTCGCTGTATTGCTCCAAACACCTGTCAGTGTGAGCCTGGCTGGGGAGGGACCAACTGCTCCAGTG
Seq C2 exon
CCTGCGATGGTGATCACTGGGGTCCCCACTGCACCAGCCGGTGCCAGTGCAAAAATGGGGCTCTGTGCAACCCCATCACCGGGGCTTGCCACTGTGCTGCGGGCTTCCGGGGCTGGCGCTGCGAGGACCGCTGTGAGCAGGGCACCTATGGTAACGACTGTCATCAGAGATGCCAGTGCCAGAATGGAGCCACCTGCGACCACGTCACGGGGGAATGCCGCTGCCCACCAGGATACACCGGAGCCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000145794_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF075468=EMI=PD(39.7=82.9)
A:
NO
C2:
PF126612=hEGF=PU(84.6=13.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAAGCGGGGAAATGTGTGT
R:
TTACCATAGGTGCCCTGCTCA
Band lengths:
177-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development