RnoEX0053770 @ rn6
Exon Skipping
Gene
ENSRNOG00000013674 | Megf10
Description
multiple EGF-like domains 10 [Source:RGD Symbol;Acc:735084]
Coordinates
chr18:52269469-52305712:+
Coord C1 exon
chr18:52269469-52269569
Coord A exon
chr18:52288895-52288987
Coord C2 exon
chr18:52305466-52305712
Length
93 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTCTCTCCGACAGCTC
3' ss Score
11.78
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
AGTGAGCTACCGGACAGCCTACCGCCATGGGGAGAAAACCATGTACAGACGCAAATCCCAGTGTTGCCCCGGATTTTATGAAAGTCGAGACGTGTGTGTCC
Seq A exon
CTCACTGCGCTGATAAATGCGTCCACGGTCGCTGCATCGCTCCAAACACCTGTCAGTGTGAGCCTGGCTGGGGTGGGACCAACTGTAGCAGTG
Seq C2 exon
CTTGTGACGGTGATCACTGGGGACCTCACTGCAGCAGCCGGTGTCAGTGCAAAAACAGAGCTTTGTGTAACCCCATCACCGGAGCTTGTCACTGCGCCGCGGGCTACCGGGGATGGCGCTGTGAGGACCGTTGTGAACAGGGCACCTACGGTAACGACTGTCATCAAAGGTGCCAGTGTCAGAATGGAGCGACCTGTGACCACATCACTGGGGAATGTCGTTGTTCACCTGGATACACTGGAGCCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013674-'8-6,'8-4,9-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF075468=EMI=PD(39.7=82.9),PF0236314=C_tripleX=PU(22.2=11.4)
A:
PF0236314=C_tripleX=PD(72.2=40.6),PF126612=hEGF=WD(100=40.6)
C2:
PF0005319=Laminin_EGF=WD(100=55.4),PF126612=hEGF=PU(84.6=13.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACCGCCATGGGGAGAAAAC
R:
CAGTGACAAGCTCCGGTGATG
Band lengths:
177-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]