BtaEX6039604 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000329 | MEGF10
Description
Bos taurus multiple EGF-like-domains 10 (MEGF10), mRNA. [Source:RefSeq mRNA;Acc:NM_001046451]
Coordinates
chr7:27882085-27940714:-
Coord C1 exon
chr7:27940614-27940714
Coord A exon
chr7:27904015-27904107
Coord C2 exon
chr7:27882085-27882331
Length
93 bp
Sequences
Splice sites
3' ss Seq
TTGATTTTTCTCTCTGACAGCCC
3' ss Score
9.83
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
AATCAGTTATCGGACCGCCTATCGACATGGAGAAAAAACTATGTACAGACGCAAGTCCCAGTGTTGTCCTGGATTTTACGAGAGCAGGGAAATGTGTGTCC
Seq A exon
CCCACTGTGCTGATAAATGTGTCCATGGTCGCTGCATTGCTCCAAACACCTGTCAGTGTGAGCCTGGCTGGGGTGGGACCAACTGCTCCAGTG
Seq C2 exon
CCTGCGACGGTGATCACTGGGGACCTCACTGCAGCAGCCGGTGCCAGTGCAAAAATGGGGCACTGTGCAACCCCATCACAGGGGCTTGCCACTGCGCTGCGGGCTTCCGGGGCTGGCGCTGTGAGGAGCGCTGTGAGCAGGGCACCTACGGTAATGATTGTCACCAGAGATGCCAGTGCCAGAATGGAGCAACCTGCGATCATGTCACGGGGGAGTGCCGCTGCCCACCTGGATACACTGGAGCCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000329-'7-5,'7-4,8-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF126612=hEGF=PU(84.6=13.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGCCTATCGACATGGAGAA
R:
CTGTGATGGGGTTGCACAGTG
Band lengths:
169-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]