BtaEX0026528 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012405 | PEAR1
Description
Bos taurus platelet endothelial aggregation receptor 1 (PEAR1), mRNA. [Source:RefSeq mRNA;Acc:NM_001101300]
Coordinates
chr3:13995039-13996442:-
Coord C1 exon
chr3:13996342-13996442
Coord A exon
chr3:13995552-13995644
Coord C2 exon
chr3:13995039-13995282
Length
93 bp
Sequences
Splice sites
3' ss Seq
AACCCCCATCTCTGCCCCAGCGC
3' ss Score
6.3
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
TGTTGTCTACCGGACCGTGTACCGCCAAGTGGTGAAGACGGAGCACCGGATGCGGCTGCAGTGCTGCCGGGGCTTCTATGAGAGCCGCGGGGCCTGTGTCC
Seq A exon
CGCTTTGTGCTCAGGAGTGTGTCCATGGCCGCTGTGTGGCACCCAATCAGTGCCAATGTGTGCAAGACTGGCGGGGTGACGACTGCTCCAGTG
Seq C2 exon
CTTGTGCCCCAGGAGTGTGGGGGCCGAAGTGTGACAAGCCCTGCAACTGCGGCAACAGCAGCTCCTGTGACCCCAAGAGTGGGGCATGTTCCTGTCCCTCTGGCCTGCAGCCCCCACACTGCCTTCAGCCCTGCTCCCCTGGCCTCTATGGCCCTGCCTGCCAGTTCAGCTGCCAGTGCCATGGGGCGCCCTGTAACCCCCAGACCGGAGCCTGCCTCTGCCCCCCAGAGAGAACCGGGCCCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012405-'7-12,'7-11,9-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACCGCCAAGTGGTGAAGAC
R:
CAGGAACATGCCCCACTCTTG
Band lengths:
177-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development