HsaEX6034114 @ hg19
Exon Skipping
Gene
ENSG00000187800 | PEAR1
Description
platelet endothelial aggregation receptor 1 [Source:HGNC Symbol;Acc:33631]
Coordinates
chr1:156875116-156876512:+
Coord C1 exon
chr1:156875116-156875216
Coord A exon
chr1:156876068-156876160
Coord C2 exon
chr1:156876429-156876512
Length
93 bp
Sequences
Splice sites
3' ss Seq
CACACCCATCTCTGTCCCAGCGC
3' ss Score
6.86
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
GGTTGTATACCGGACCGTGTACCGTCAGGTGGTGAAGACGGACCACCGCCAGCGCCTGCAGTGCTGCCATGGCTTCTATGAGAGCAGGGGGTTCTGTGTCC
Seq A exon
CGCTCTGTGCCCAGGAGTGTGTCCATGGCCGTTGTGTGGCACCCAATCAGTGCCAATGTGTGCCAGGCTGGCGGGGCGACGACTGTTCCAGTG
Seq C2 exon
AGTGTGCCCCAGGAATGTGGGGGCCACAGTGTGACAAGCCCTGCAGCTGCGGCAACAACAGCTCGTGTGATCCCAAGAGTGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187800-'5-9,'5-7,7-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF075468=EMI=PD(39.2=82.9)
A:
PF126612=hEGF=WD(100=40.6)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATACCGGACCGTGTACCGTC
R:
CACTCTTGGGATCACACGAGC
Band lengths:
177-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)