RnoALTA0028852-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000002949 | Pgs1
Description
phosphatidylglycerophosphate synthase 1 [Source:RGD Symbol;Acc:1305052]
Coordinates
chr10:107025832-107029946:+
Coord C1 exon
chr10:107025832-107025957
Coord A exon
NA
Coord C2 exon
chr10:107029846-107029946
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGCAGGT
5' ss Score
2.53
3' ss Seq
AACCTCCCCACTCTTTTCAGAGA
3' ss Score
8.35
Exon sequences
Seq C1 exon
GAGCAAGAGCAGCTCTACCTGCGGTCTGGTGTGGTTTCCTCTGCGACCTTTGAGCAGCCAGGTCGGCAGGTCAAGCTGTGGGTGAAGATGGTGACCCCGCTGATCAAGAACTTCTTTTGAGAACAG
Seq A exon
NA
Seq C2 exon
AGACAGGCCAGTGACTGGGAGCCCTGAAGAGTTCAGGCCAGGTGCCAGGGCCTGAGAGTGCCAAACACAGAGGAGTGTGGACCGAGGACTCCGAAGTGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002949-26-19,26-18-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF130911=PLDc_2=PD(2.9=12.5)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAAGAGCAGCTCTACCTG
R:
AGTCACTTCGGAGTCCTCGG
Band lengths:
226-451
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]