RnoALTD0009193-2/4 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000003028 | Dnah17
Description
dynein, axonemal, heavy chain 17 [Source:RGD Symbol;Acc:1563805]
Coordinates
chr10:107029466-107030957:-
Coord C1 exon
chr10:107030752-107030957
Coord A exon
chr10:107030732-107030751
Coord C2 exon
chr10:107029466-107029713
Length
20 bp
Sequences
Splice sites
5' ss Seq
AAGGTGACA
5' ss Score
5.19
3' ss Seq
CAGCTCCATTGTCCCCACAGGAG
3' ss Score
8.86
Exon sequences
Seq C1 exon
GAGCTTGAATCCTGGACAACAGACTTCGCCCTGCCCACCACTGTGTGGCTGGCTGGGTTCTTCAACCCACAGTCGTTTCTCACTGCCATCATGCAGTCCATGGCCAGGAAAAACGAGTGGCCCCTGGATAAGATGTGCCTGTCTGTGGAGGTGACCAAGAAGACCCGGGAAGACATGACTGCCCCTCCTCGAGAGGGCTCCTACGT
Seq A exon
GTACGGGCTCTTCATGGAAG
Seq C2 exon
GAGCTCGCTGGGACACCCAGACCGGAGTCATTGCTGAAGCAAAGCTGAAGGATCTGACCCCAGTCATGCCCGTCATCTTCATCAAGGCCATTCCTGTGGACCGAATGGAGACCAAGAACATCTATGAATGCCCCGTGTACAAGACACGTATCCGAGGACCCACCTATGTCTGGACTTTTAACCTGAAGACCAAAGAGAAGGCGGCCAAGTGGATCCTGGCAGCCGTGGCGCTGCTTCTGCAGGTGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003028-94-100,95-100,96-100,97-100-2/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(10.1=100)
A:
NA
C2:
PF0302810=Dynein_heavy=PD(10.8=96.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGACCCGGGAAGACATGACT
R:
TGGGGTCAGATCCTTCAGCTT
Band lengths:
109-129
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]