RnoALTA0029220-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000029938 | Pik3c2b
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta [Source:RGD Symbol;Acc:1306541]
Coordinates
chr13:49882751-49884341:+
Coord C1 exon
chr13:49882751-49882944
Coord A exon
chr13:49883835-49884251
Coord C2 exon
chr13:49884252-49884341
Length
417 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TCCCCAGCTCCGAAAAAAAGAAC
3' ss Score
-3.88
Exon sequences
Seq C1 exon
AAGGTGGTAGAAGCCTTGACAGCAGCCATCTTGGACTTAGTGGAGCTGTACTGCAGCACATTCAATGCAGACTTCCAGACAGCCGTACCTGGGAGCCGAAAGCATGATTTGGTTCAAGAGGCCTGCCACTTCTCTGGGGCCCTGGCCTTCACTGTCTATGGCACTCACCGTATTCCCATCATCTGGGCTACCAG
Seq A exon
AACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAGGCTAGACCGCCATTCCCATGAAATGACAAAGAAAAAAAAAATTCCTATACTCACCATGGGCCTAAAACTCAGGGGTCTAGGGATCCCGATTGAAGAGGCTAGACCGCCATTCCCATGAAATGACAAAGAAAAAAAAAATTCCTATACTCACCATGGGCCTAAAACTCAGGGGTCTAGGGATCCCGATTGAGCTGCTGTTCCTAAGCCCACTTCCTTAAGCCTGGTTTGGTTGTCCTACCCTGACCCCATGTTGCATCCTCCAGAGATCAAGAGAAGTAAGTCTACCGGAGGAAATGGAAGCTGGCAGCAGGGTGGCTGAGGTTGGTTTTAAGGGCAGCTGTACTGGTCCTGACCCACTCTGATTGCTTTGTAG
Seq C2 exon
CTATGAAGAGTTCTACCTCTCCTGCTCCCTCAGCCACGGTGGCAAGGAACTTTGCAGCCCTCTGCAGACCCGGCGGGCTCACTTCTCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029938-19-17,19-16-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0079219=PI3K_C2=PU(0.1=0.0)
A:
NA
C2:
PF0079219=PI3K_C2=PU(29.1=97.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGTAGAAGCCTTGACAGC
R:
TTGGAGAAGTGAGCCCGCC
Band lengths:
282-699
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]