RnoEX0065942 @ rn6
Exon Skipping
Gene
ENSRNOG00000029938 | Pik3c2b
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta [Source:RGD Symbol;Acc:1306541]
Coordinates
chr13:49881068-49884482:+
Coord C1 exon
chr13:49881068-49881101
Coord A exon
chr13:49882754-49882944
Coord C2 exon
chr13:49883835-49884482
Length
191 bp
Sequences
Splice sites
3' ss Seq
CAACCCCCTTCACAGAGAAGGTG
3' ss Score
-4.07
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GATCCCAGTGTGTTGACCGTGAGAGAAAACCGAG
Seq A exon
GTGGTAGAAGCCTTGACAGCAGCCATCTTGGACTTAGTGGAGCTGTACTGCAGCACATTCAATGCAGACTTCCAGACAGCCGTACCTGGGAGCCGAAAGCATGATTTGGTTCAAGAGGCCTGCCACTTCTCTGGGGCCCTGGCCTTCACTGTCTATGGCACTCACCGTATTCCCATCATCTGGGCTACCAG
Seq C2 exon
AACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAGGCTAGACCGCCATTCCCATGAAATGACAAAGAAAAAAAAAATTCCTATACTCACCATGGGCCTAAAACTCAGGGGTCTAGGGATCCCGATTGAAGAGGCTAGACCGCCATTCCCATGAAATGACAAAGAAAAAAAAAATTCCTATACTCACCATGGGCCTAAAACTCAGGGGTCTAGGGATCCCGATTGAGCTGCTGTTCCTAAGCCCACTTCCTTAAGCCTGGTTTGGTTGTCCTACCCTGACCCCATGTTGCATCCTCCAGAGATCAAGAGAAGTAAGTCTACCGGAGGAAATGGAAGCTGGCAGCAGGGTGGCTGAGGTTGGTTTTAAGGGCAGCTGTACTGGTCCTGACCCACTCTGATTGCTTTGTAGCTATGAAGAGTTCTACCTCTCCTGCTCCCTCAGCCACGGTGGCAAGGAACTTTGCAGCCCTCTGCAGACCCGGCGGGCTCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029938-'18-16,'18-15,19-16
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
PF0079219=PI3K_C2=PU(0.1=0.0)
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTGTGTTGACCGTGAGAG
R:
ACCCCTGAGTTTTAGGCCCAT
Band lengths:
247-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]