GgaEX7010783 @ galGal4
Exon Skipping
Gene
ENSGALG00000000623 | PIK3C2B
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta [Source:HGNC Symbol;Acc:HGNC:8972]
Coordinates
chr26:1739994-1741525:-
Coord C1 exon
chr26:1741492-1741525
Coord A exon
chr26:1740963-1741158
Coord C2 exon
chr26:1739994-1740116
Length
196 bp
Sequences
Splice sites
3' ss Seq
CTCTCCTTTCTCCCCTGCAGAGA
3' ss Score
12.5
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
GATCCAAATGTTCTGGCCAAGAGGGAAAATCGAG
Seq A exon
AGAGGATCGTGGAGAGCCTGACGGCCGCCATCCTGGACCTGGTGGGGCTGTACTGCAGCACCTTCAATGCTGACTTCCAGACAGCTGTGCAATGGAGCCGGGAGCACGGCGTGGTGCAGGAGGCTCGCCTGCTCTCCTGCCCACTCTCCTTCACCGTTTACGCCACACACCGCATCCCCATCACCTGGGCTGCCAG
Seq C2 exon
CTATGAAGATTTCTACCTCTCTTGCTCCATCACGCACGGTGGTAAGGAGCTGTGCAGCCCCCTGCACACCAGAAAGGCCCACGTCTACAAGTACCTTTTCCACCTCATCATATGGGACCAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000623-'9-13,'9-11,10-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0079219=PI3K_C2=PU(0.1=0.0)
C2:
PF0079219=PI3K_C2=PU(29.1=97.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAAATGTTCTGGCCAAGAGG
R:
TGCTGGTCCCATATGATGAGGT
Band lengths:
155-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]