BtaEX6067407 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000024633 | PIK3C2B
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta [Source:HGNC Symbol;Acc:HGNC:8972]
Coordinates
chr16:2013622-2015784:-
Coord C1 exon
chr16:2015751-2015784
Coord A exon
chr16:2014750-2014945
Coord C2 exon
chr16:2013622-2013744
Length
196 bp
Sequences
Splice sites
3' ss Seq
CCGACCCCTTCCTTAAACAGAGA
3' ss Score
8.11
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GATCCCACCGTCTTGGCCATGAAGGAAAACCGAG
Seq A exon
AGAAGGTTGTGGAAGCCCTGACGGCTGCCATCTTGGACCTGGTGGAGCTGTACTGCAACACGTTCAACGCAGACTTCCAGCCCGCGGTGCCTGGGAGCCGCAAGCACACCCTGGTTCAGGAGGCCTGCCATCTCTCGGGGCCGCTGGCCTTCACGGTCTATGCCACCCACCGCATCCCGATCACCTGGGCTACCAG
Seq C2 exon
CTATGAAGAGTTCTACCTCTCCTGCTCCCTCAGCCACGGCGGCAAGGAGCTGTGCAGCCCCCTGCAGACCCGACGGGTCCACTTCTCCAAGTACCTCTTCCACCTCGTCATCTGGGACCAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024633-'12-15,'12-14,13-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0079219=PI3K_C2=PU(0.1=0.0)
C2:
PF0079219=PI3K_C2=PU(29.1=97.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCCCACCGTCTTGGCCAT
R:
CTGGTCCCAGATGACGAGGT
Band lengths:
155-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]