HsaEX6036221 @ hg19
Exon Skipping
Gene
ENSG00000133056 | PIK3C2B
Description
phosphoinositide-3-kinase, class 2, beta polypeptide [Source:HGNC Symbol;Acc:8972]
Coordinates
chr1:204423797-204426198:-
Coord C1 exon
chr1:204426165-204426198
Coord A exon
chr1:204424984-204425179
Coord C2 exon
chr1:204423797-204423919
Length
196 bp
Sequences
Splice sites
3' ss Seq
CTGACCCCTTCCCTTCCCAGAGA
3' ss Score
10.71
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GATCCCAGTGTCTTGGCTGTGAGGGAAAACCGAG
Seq A exon
AGAAGGTCGTGGAAGCCCTGACCGCTGCCATCTTGGACCTGGTGGAGCTGTACTGCAACACATTCAACGCAGACTTCCAGACGGCAGTGCCCGGGAGCCGCAAGCATGACCTGGTCCAGGAGGCCTGCCATTTCGCCAGGTCCCTGGCCTTCACTGTCTATGCCACCCACCGCATCCCCATCATCTGGGCTACCAG
Seq C2 exon
CTATGAAGATTTCTACCTCTCCTGCTCCCTCAGCCATGGCGGCAAGGAGCTGTGCAGCCCCCTGCAGACCCGAAGAGCTCACTTCTCCAAGTACCTCTTCCACCTCATCGTCTGGGACCAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000133056-'18-20,'18-17,20-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0079219=PI3K_C2=PU(0.1=0.0)
C2:
PF0079219=PI3K_C2=PU(29.1=97.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCCCAGTGTCTTGGCTGTG
R:
CTGGTCCCAGACGATGAGGT
Band lengths:
155-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)