MmuEX6027403 @ mm10
Exon Skipping
Gene
ENSMUSG00000026447 | Pik3c2b
Description
phosphoinositide-3-kinase, class 2, beta polypeptide [Source:MGI Symbol;Acc:MGI:2685045]
Coordinates
chr1:133078219-133081337:+
Coord C1 exon
chr1:133078219-133078252
Coord A exon
chr1:133079644-133079839
Coord C2 exon
chr1:133080961-133081337
Length
196 bp
Sequences
Splice sites
3' ss Seq
CTGACCTCCCCACTTCACAGAGA
3' ss Score
8.34
5' ss Seq
CAGGTGACT
5' ss Score
6.6
Exon sequences
Seq C1 exon
GATCCCAGCGTGTTGAGTGTGAGGGAAAACCGAG
Seq A exon
AGAAGGTGGTAGAAGCCTTGACAGCGGCCATCTTGGACTTGGTGGAGCTGTACTGCAGCACATTCAATGCAGACTTCCAGACGGCGGTGCCTGGGAGCCGAAAGCATGATTTGGTTCAAGAGGCCTGCCACTTCCCTGGGGCCCTGGCCTTCACTGTCTATGGCACTCACCGTATTCCCATCATCTGGGCTACCAG
Seq C2 exon
CTATGAAGATTTCTACCTCTCCTGCTCCCTCAGCCACGGTGGCAAGGAACTTTGCAGCCCCCTGCAGACCCGGCGGGCTCACTTCTCCAAGTACCTGTTCCACCTCATCATCTGGGACCAGCAGTAAGCCCTCTCTCTCAGCTCCAGGATGGCTGCAGCTAACCTGCTTCCTTCAGGGATGCCCTGGAGCAGTAGACAGTCAGACTGAGCACAAGCCTGGGTCAAATCAGGTTCCATAACTCTCCTTATCCAGATAGATCCTCCAGCTTCCCGAGTCATTTCCTGACTCTTACCTGGGGACAAACATGCCGCCATCTCTACCTTTCAAGTTATTAGGAACACCCAACCGGAAGTACCCATAAAACTTCTTTATACTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026447-'20-21,'20-13,22-21=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0079219=PI3K_C2=PU(0.1=0.0)
C2:
PF0079219=PI3K_C2=PU(29.1=97.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTGTTGAGTGTGAGGGAAA
R:
ATTTGACCCAGGCTTGTGCTC
Band lengths:
254-450
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types